Diversity (of speakers, participants) at meetings: do something about it

Some unformed thoughts here but here goes.

Every so often I see a conference announcement and am annoyed by the XY/XX excess for the speakers.  Some recent examples
And more.

Now - I complain about this here and there on Twitter and the like


But I felt that this needed a blog post to not get lost in the Twitter stream.  So here it is.

I note - I have posted about this issue previously: A conference where the speakers are all women? | The Tree of Life and for conference for which I am involved I have been trying very hard to work on the speaker diversity (not just XX vs XY, but age, career status, ethnicity, etc).  And it certainly can be difficult to make sure that diversity is there.  But the meetings I list above are pretty egregious.  The Genome Canada one features seven major speakers - all white males.  Yes, they are all big names.  But in biology, where women are reasonably well represented, it suggests a bias to me if a meeting can somehow only manage to invite and/or attract all senior, white, XYs to be major speakers.  Not sure what that bias is and it could be different in each case -  could be who is invited - could be the field itself - could be timing/nature of the meeting - could be something to do with families (e.g., perhaps women are invited but are more likely to feel like limiting travel due to roles in child care).

Also I note - biases are not necessarily affecting any one gender or ethnic group.  For example, I have generally stopped going to meetings/conferences that are on weekends and I have also stopped going to meetings/dinners after 6 PM because I do not want to skip out on time with my family.

So here is a plea.  Next time you are involved in organizing a meeting - make some effort to have a strong representation of diversity of speakers and participants.  For example, if you invite lots of women for example and all say no - try to figure out why and see if you can fix the issue.  Offer travel fellowships for students.  Offer child care or child activity options (even if you cannot pay for it - at least make it easy for people).  Make sure to advertise/promote the meeting to groups/institutions with a high representation of underrepresented groups.  Don't give up if your first efforts don't work.  Sometimes it can be difficult to make sure diversity levels are high.  But keep trying ... it will help make the conference better and also will help the field in general ...

Dubious Press Release from Cedars-Sinai linking Irritable Bowel Syndrome (IBS) and Bacteria in Gut

Quick one here.

Not impressed with this press release from Cedar-Sinai: Dr. Pimentel links IBS and gut bacteria - Cedars-Sinai (see other variants of it here: Daily Disruption – Cedars-Sinai Study Links Irritable Bowel Syndrome (IBS) and Bacteria in Gut and here: Irritable bowel syndrome clearly linked to gut bacteria).

Among the things that bug me here:

  • They don't include a link to the paper or even provide a citation
  • They claim that culturing microbes is the "gold standard" for connecting bacteria to the cause of this disease.  AND they imply this is the first method to use culturing to study the disease.  Both notions are wrongheaded.  
  • They confuse cause of IBS and symptoms.  They say that b/c antibiotics help reduce symptoms, therefore, bacteria cause the disease.  Really?  So then fevers must cause things like malaria and flu because ibuprofen helps reduce symptoms right?
  • At some point it might be nice to mention that the MD behind the new study has also been pushing the idea that IBS is caused by bacterial overgrowth for many years both in a book and via a testing company though it is unclear what his association with the company is.  I note - ads for the book claim " In addition, Dr. Pimentel presents a simple treatment protocol that will not only help you resolve your IBS symptoms, but will also prevent their recurrence."  So - apparently he already had a cure BEFORE the new study was even done.  I general I am skeptical of papers that show evidence for something coming from someone who apparently already "knew" the answer.

Of course, I am not saying IBS is NOT caused by bacterial overgrowth as they claim.  But I can say this - PRs like this make me skeptical that anything new was done in this current publication.

Nice Collection from Diane Dawson: Open Science and Crowd Science: Selected Sites and Resources

Quick post here - already posted to Twitter and wanted to make sure this one was seen by people who read this blog but don't follow me on Twitter.

There is a nice compilation/commentary/review from Diane Dawson titled Open Science and Crowd Science: Selected Sites and Resources.  It is in the journal "Issues in Science and Technology Librarianship" (which I note - is a new one to me).  It has a lot of useful resources and comments about various open science activities on the web.  Definitely worth checking out.

Yum - Carbon monoxide, worms, bacteria - all together - what could be better

Just a quick one here pointing people to a paper and some stories relating to work by Nicole Dubilier on the worm Olavius algarvensis and it's chemosynthetic symbionts.

Guest post: Story Behind the Paper by Joshua Weitz on Neutral Theory of Genome Evolution

I am very pleased to have another in my "Story behind the paper" series of guest posts.  This one is from my friend and colleague Josh Weitz from Georgia Tech regarding a recent paper of his in BMC Genomics.  As I have said before - if you have published an open access paper on a topic related to this blog and want to do a similar type of guest post let me know ...

----------------------------------------
A guest blog by Joshua Weitz, School of Biology and Physics, Georgia Institute of Technology

Summary This is a short, well sort-of-short, story of the making of our paper: “A neutral theory of genome evolution and the frequency distribution of genes” recently published in BMC Genomics. I like the story-behind-the-paper concept because it helps to shed light on what really happens as papers move from ideas to completion. It's something we talk about in group meetings but it's nice to contribute an entry in this type of forum.  I am also reminded in writing this blog entry just how long science can take, even when, at least in this case, it was relatively fast. 


The pre-history The story behind this paper began when my former PhD student, Andrey Kislyuk (who is now a Software Engineer at DNAnexus) approached me in October 2009 with a paper by Herve Tettelin and colleagues.  He had read the paper in a class organized by Nicholas Bergman (now at NBACC). The Tettelin paper is a classic, and deservedly so.  It unified discussions of gene variation between genomes of highly similar isolates by estimating the total size of the pan and core genome within multiple sequenced isolates of the pathogen Streptococcus agalactiae.  

Nathan Wolfe talk at #UCDavis Wrap Up #Storify #Viruses

Nathan Wolfe talked at UC Davis yesterday.  I met with him for 30 minutes just before his talk.  Many times I feel that 30 minutes is more than enough when meeting with outside seminar speakers.  I definitely would have enjoyed more time with Wolfe - he does some pretty fascinating stuff.

Anyway - I escorted him to his talk and then I took notes for it on Twitter as did Pam Ronald (who was sitting next to me).  I then made a "Storification" of the talk (using the Storify.Com system).

This is below:

Wow - ALVIN submarine has potential to be vector for species movement cc: @deepseanews


Well, it is (relatively) common knowledge that surface ships can serve as unintentional vectors for the movement of organisms via things like ballast water (see for example this recent post on Deep Sea News which discusses this in part).  And the ecological favor wreaked by such ship-based-transport can be immense.

A new paper, and news story, call attention to an analogous process that might occur with deep-sea submarines (see news story here: U.S. News - Deep-sea aliens hitched ride by submarine to pristine area).  The basic summary is - researchers using the deep sea sub ALVIN have discovered that, contrary to expectations, some organisms from the deep were able to survive the sub surfacing, being brought on board the mother ship, and then being sent back down to another site.  Some limpets apparently hung out in some tubing for a day and were then "sampled" by the sub at another site.  Apparently, nobody had thought this might be an issue because they had assumed that the surfacing and bringing on deck and cleaning of ALVIN would kill any organisms from one site before traversing to the next place.  Apparently not.

I note one comment - it seems reasonable to think that microbes might be hitching a ride on ALVIN and other submersibles too ... which brings me back to the recent post on Deep Sea News I linked to above.  It is by Holly Bik, a post doc in my lab, and in it she discussed the possibility that microbes might be getting moved around by surface ships.  Well, it seems that submersibles should be looked at too ..

Smells like a SCAM: Invitation to Participate in the East African Universities' Lecture Series and a Safari

Hmm ... this smells off. Must be as SCAM somewhere in here.


---------- Forwarded message ----------
From: Tours of Purpose (TOP) <info@toursofpurpose.com>
Date: Wed, May 23, 2012 at 9:29 PM
Subject: Invitation to Participate in the East African Universities'
Lecture Series and a Safari


Dear University of California Faculty and Staff:

Tours of Purpose, TOP, a professor exchange agency dedicated to the
development and improvement of economic, academic and general welfare
in East Africa (i.e., Uganda, Kenya, Tanzania, Rwanda and Burundi) is
hereby extending a humble invitation to you to participate in our
ongoing program of lecture series taking place in our local
universities, colleges, high schools, primary schools and other
academic institutions.  Additionally, TOP would like to avail to you a
one in a lifetime opportunity to take a safari where you will see and
photograph lions, elephants, giraffes, leopards, zebras, hippos,
rhinos, among an array of wildlife, in addition to a rare opportunity
to visit the mountain gorillas and man's closest relative, the chimp,
at a TOP' scholars' give away price. Winston Churchill took this trip
and immortally dabbed Uganda "The Pearl of Africa", and Queen
Elizabeth was on such a safari when she learned that she had become
queen of England. The average visit lasts for about two weeks--with a
couple of days or so dedicated to visiting the said incredible African
wildlife reserves--although you may wish for your particular visit to
be shorter or longer. TOP would like to partner with a specific
professor, or any academician, in pursuing a possibility of coming to
East Africa to deliver lectures in any given dispositive academic
discipline.  TOP will cooperate with you in arranging and customizing
your travel details to Africa, including picking you up at the airport
in TOP state of the art SUVs, booking fair accommodation, arranging
your meals, setting and managing your speaking schedule, taking you on
a safari trip and other tours, and ultimately delivering you to the
airport for your flight home. TOP invariably offers the option of one
being paired with another educator from North America or Europe during
this trip, although traveling alone in East Africa is not complicated
nor precarious at all.

Kimberly-Clark's deceptive self serving PR regarding germs in the workplace #BadReportingToo

First I saw of this story was here: Study: Bacteria fills office break rooms - Local News - Houston, TX - msnbc.com

Something sounded off with this.  I think it was the fact that it involved "Cleaning products company Kimberly-Clark" that raised some alarm bells.  The involvement of Charles Gerba also left me a bit queasy as I have seen his name associated with a few recent "studies" which are basically germaphobia funded by cleaning product companies.

After looking around a bit I got discouraged at the whole thing and put it out of my head for a few hours.  And then David Coil, a post doc in my lab, sent me a link to the press release behind this story.  And boy is it a doozy.

The PR basically makes the following dubious statements or implications
* All bacteria are bad.  The whole PR references a study that they imply is about detecting bacteria in various locations.  And when they detect high levels they conclude this is bad.  For example in the title "Where the Germs Are: New Study Finds Office Kitchens and Break Rooms are Crawling with Bacteria".  Or in the text: "If you thought the restroom was the epicenter of workplace germs you don't want to know about office break rooms and kitchens" "office germ "hot-spots,"" "Office workers are potentially being exposed to illness-causing bacteria right in their own lunchrooms" and much more.  Uggh.  Not all bacteria are bad.  Gerba and Kimberly-Clark must know this yet they purposefully mislead.

* Presence of ATP means presence of bacteria (and see above - this must imply presence of bad bacteria).  Wow.  Not sure what to say here.  But they use a test for ATP which they say  "ATP is present in all animal, vegetable, bacteria, yeast and mold cells. Detection of ATP indicates the presence of contamination by any of these sources. Everyday objects with an ATP reading of 300 or higher are considered to have a high risk for illness transmission."  No citation given. And sounds highly dubious to go from ATP - > risk for illness.  Sounds completely dubious actually.

* That it is OK to make claims in Press Releases without presenting evidence behind the claims.  The PR tries to make this all seem very scientific.  Well, where is the paper behind this?  They claim "The findings are from a study carried out by Kimberly-Clark Professional* and is believed to be one of the most detailed and comprehensive studies ever conducted on identifying workplace hotspots where germs can lurk."  Where is the actual data?  Where are the methods described?  Yuck.

Alas - despite the fact that the Press Release is at best a self serving piece of dubious scientific quality - the press has run with the story sucking up everything Gerba and Kimberly Clark are saying.  Ugg.  Here are some examples, many of which really do a poor job on the science and the conflicts of interest inherent in an unpublished study from a cleaning products company

I am getting sick and tired of crap like this.  Kimberly-Clark may make some useful products.  I don't really know.  But deceptive press releases like this suggest that their dedication to science is, well, low.  They need to clean up their act.

What to do - what to do - cool microbial art w/ a #badomics word --- must resist purchasing -- must resist ...

OK - thanks to Dan Smith for pointing me to: Phonome original watercolor painting bacteria by artologica

This was inspired in part by phone sampling I helped Dan and Jack Gilbert do at the AAAS meeting.  And Michelle Banks (i.e., @artologica) has not only made microbial art out of it but has coined a new OME word.  I think she is aiming directly at me here ... must resist.  Must resist.